A flexible multi‐species genome‐wide 60K SNP chip developed from pooled resequencing of 240 Eucalyptus tree genomes across 12 species
نویسندگان
چکیده
منابع مشابه
Genomic Selection for growth traits in Eucalyptus benthamii and E. pellita populations using a genome-wide Eucalyptus 60K SNPs chip
University of Brasília, Molecular Biology Program, Campus Darcy Ribeiro, 70910-900, Brasília, DF, Brazil ([email protected]). EMBRAPA Genetic Resources and Biotechnology, Estação Parque Biológico, 70770910, Brasília, DF, Brazil ([email protected]). University of Florida, School of Forest Resources and Conservation, Forest Genomics Laboratory, 32611, Gainesville, FL, USA (mkirst@uf...
متن کاملGenotyping pooled DNA using 100K SNP microarrays: a step towards genomewide association scans
The identification of quantitative trait loci (QTLs) of small effect size that underlie complex traits poses a particular challenge for geneticists due to the large sample sizes and large numbers of genetic markers required for genomewide association scans. An efficient solution for screening purposes is to combine single nucleotide polymorphism (SNP) microarrays and DNA pooling (SNP-MaP), an a...
متن کاملGene Family Evolution across 12 Drosophila Genomes
Comparison of whole genomes has revealed large and frequent changes in the size of gene families. These changes occur because of high rates of both gene gain (via duplication) and loss (via deletion or pseudogenization), as well as the evolution of entirely new genes. Here we use the genomes of 12 fully sequenced Drosophila species to study the gain and loss of genes at unprecedented resolution...
متن کاملChallenges in Species Tree Estimation Under the Multispecies Coalescent Model.
The multispecies coalescent (MSC) model has emerged as a powerful framework for inferring species phylogenies while accounting for ancestral polymorphism and gene tree-species tree conflict. A number of methods have been developed in the past few years to estimate the species tree under the MSC. The full likelihood methods (including maximum likelihood and Bayesian inference) average over the u...
متن کاملEfficient Bayesian Species Tree Inference under the Multispecies Coalescent.
We develop a Bayesian method for inferring the species phylogeny under the multispecies coalescent (MSC) model. To improve the mixing properties of the Markov chain Monte Carlo (MCMC) algorithm that traverses the space of species trees, we implement two efficient MCMC proposals: the first is based on the Subtree Pruning and Regrafting (SPR) algorithm and the second is based on a node-slider alg...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: New Phytologist
سال: 2015
ISSN: 0028-646X,1469-8137
DOI: 10.1111/nph.13322